API for fintzij/stemr
Stochastic Epidemic Model Simulation and Estimation

Global functions
CALL_D_MEASURE	Man page Source code
CALL_INTEGRATE_STEM_ODE	Man page Source code
CALL_RATE_FCN	Man page Source code
CALL_R_MEASURE	Man page Source code
CALL_SET_ODE_PARAMS	Man page Source code
add2vec	Man page Source code
blocks2cov	Man page Source code
build_census_path	Man page Source code
build_flowmat	Man page Source code
build_measproc_indmat	Man page Source code
build_obsmat	Man page Source code
build_rate_adjmat	Man page Source code
build_tcovar_adjmat	Man page Source code
build_tcovar_changemat	Man page Source code
build_tcovar_matrix	Man page Source code
calc_initdist_loglik	Man page Source code
calc_params_logprior	Man page Source code
census_incidence	Man page Source code
census_latent_path	Man page Source code
census_path	Man page Source code
census_path_collection	Man page Source code
check_tpar_depends	Man page Source code
comp_chol	Man page Source code
comp_fcn	Man page Source code
compute_incidence	Man page Source code
convert_lna2	Man page Source code
copy_2_rows	Man page Source code
copy_col	Man page Source code
copy_elem	Man page Source code
copy_elem2	Man page Source code
copy_mat	Man page Source code
copy_pathmat	Man page Source code
copy_row	Man page Source code
copy_vec	Man page Source code
copy_vec2	Man page Source code
dmvtn	Man page Source code
draw_normals	Man page Source code
draw_normals2	Man page Source code
emission	Man page Source code
evaluate_d_measure	Man page Source code
evaluate_d_measure_LNA	Man page Source code
expit	Man page Source code
find_interval	Man page Source code
fit_stem	Man page Source code
forcing	Man page Source code
hello	Man page
incidence2prevalence	Man page Source code
increment_elem	Man page Source code
increment_vec	Man page Source code
initdist_control	Man page Source code
initdist_update	Man page Source code
initialize_lna	Man page Source code
initialize_ode	Man page Source code
insert_block	Man page Source code
insert_elem	Man page Source code
insert_initdist	Man page Source code
insert_params	Man page Source code
insert_tparam	Man page Source code
integrate_odes	Man page Source code
interact	Man page Source code
is_progressive	Man page Source code
lna_control	Man page Source code
lna_incid2prev	Man page Source code
lna_update	Man page Source code
load_lna	Man page Source code
load_ode	Man page Source code
logit	Man page Source code
make_stem	Man page Source code
map_draws_2_lna	Man page Source code
map_pars_2_ode	Man page Source code
mat_2_arr	Man page Source code
mcmc_kernel	Man page Source code
mvnmh_control	Man page Source code
mvnmh_update	Man page Source code
mvnss_control	Man page Source code
mvnss_settings	Man page Source code
mvnss_update	Man page Source code
normalise	Man page Source code
normalise2	Man page Source code
parblock	Man page Source code
pars2lnapars	Man page Source code
pars2lnapars2	Man page Source code
pars2parmat	Man page Source code
parse_lna_rates	Man page Source code
parse_meas_procs	Man page Source code
parse_ode_rates	Man page Source code
parse_parameter_blocks	Man page Source code
parse_rates_exact	Man page Source code
plot_adaptations	Man page Source code
prepare_initdist_objects	Man page Source code
prepare_lna_ess_schedule	Man page Source code
prepare_param_blocks	Man page Source code
propose_lna	Man page Source code
propose_lna_approx	Man page Source code
propose_mvnmh	Man page Source code
rate	Man page Source code
rate_fcns_4_lna	Man page Source code
rate_fcns_4_ode	Man page Source code
rate_update_event	Man page Source code
rate_update_tcovar	Man page Source code
rcpp_hello	Man page
reset_nugget	Man page Source code
reset_vec	Man page Source code
retrieve_census_path	Man page Source code
rmvtn	Man page Source code
rsbln	Man page Source code
sample_unit_sphere	Man page Source code
save_ess_rec	Man page Source code
save_mcmc_sample	Man page Source code
sbln_explorer	Man page Source code
sbln_normal_to_volume	Man page Source code
set_params	Man page Source code
simulate_gillespie	Man page Source code
simulate_r_measure	Man page Source code
simulate_stem	Man page Source code
stem_dynamics	Man page Source code
stem_initializer	Man page Source code
stem_measure	Man page Source code
stem_parameters	Man page Source code
sub_comp_rate	Man page Source code
sub_powers	Man page Source code
tpar	Man page Source code
tpar_control	Man page Source code
tparam_update	Man page Source code
vec_2_arr	Man page Source code
vec_2_mat	Man page Source code
which_absorbing	Man page Source code