evaluate_d_measure: Evaluate the log-density of the measurement process by...

In fintzij/stemr: Stochastic Epidemic Model Simulation and Estimation

Evaluate the log-density of the measurement process by calling measurement process density functions via external Xptr.

Description

Evaluate the log-density of the measurement process by calling measurement process density functions via external Xptr.

Usage

evaluate_d_measure(
  emitmat,
  obsmat,
  statemat,
  measproc_indmat,
  parameters,
  constants,
  tcovar_censusmat,
  d_meas_ptr
)

Arguments

emitmat	matrix of emission probabilities
obsmat	matrix containing the data
statemat	matrix containing the compartment counts at the observation times
measproc_indmat	logical matrix indicating which compartments are observed at every observation time
parameters	numeric vector of parameter values
constants	numeric vector of constants
tcovar_censusmat	numeric vector of time-varying covariate values
d_meas_ptr	external pointer to measurement process density function

fintzij/stemr documentation built on March 25, 2022, 12:25 p.m.