evaluate_d_measure_LNA: Evaluate the log-density of a possibly time-verying...

In fintzij/stemr: Stochastic Epidemic Model Simulation and Estimation

Evaluate the log-density of a possibly time-verying measurement process by calling measurement process density functions via external Xptr.

Description

Evaluate the log-density of a possibly time-verying measurement process by calling measurement process density functions via external Xptr.

Usage

evaluate_d_measure_LNA(
  emitmat,
  obsmat,
  censusmat,
  measproc_indmat,
  parameters,
  param_inds,
  const_inds,
  tcovar_inds,
  param_update_inds,
  census_indices,
  param_vec,
  d_meas_ptr
)

Arguments

emitmat	matrix of emission probabilities
obsmat	matrix containing the data
censusmat	matrix containing the state of the latent process at observation times
measproc_indmat	logical matrix indicating which compartments are observed at every observation time
parameters	matrix containing the LNA parameters, constants and time-varying coariates.
param_inds	indices for the model parameters.
const_inds	indices for the constants.
tcovar_inds	indices for the time-varying covariates.
param_update_inds	logical vector indicating when model parameters should be updated.
census_indices	vector of indices when the LNA path has been censused.
param_vec	vector for keeping the current lna parameters
d_meas_ptr	external pointer to measurement process density function

fintzij/stemr documentation built on March 25, 2022, 12:25 p.m.