lna_incid2prev: Convert an LNA path from the counting process on transition...

In fintzij/stemr: Stochastic Epidemic Model Simulation and Estimation

Convert an LNA path from the counting process on transition events to the compartment densities on their natural scale.

Description

Convert an LNA path from the counting process on transition events to the compartment densities on their natural scale.

Usage

lna_incid2prev(
  path,
  flow_matrix,
  init_state,
  forcing_matrix,
  forcing_inds,
  forcing_tcov_inds,
  forcings_out,
  forcing_transfers
)

Arguments

path	matrix containing the LNA path in terms of the counting processes on transition events (incidence)
flow_matrix	stoichiometry matrix (the transpose of the flow matrix)
init_state	initial compartment counts on the natural scale
forcing_matrix	matrix containing the forcings. The process can be re-expressed by left-multiplying each row in the path matrix by the stoichiometry matrix: X_t = X_0 + A'N_t.
forcing_inds	logical vector of indicating at which times in the time-varying covariance matrix a forcing is applied.

fintzij/stemr documentation built on March 25, 2022, 12:25 p.m.