aliscore: Cleaning of Sequence Alignments
In fmichonneau/phyloch: Tools for phylogenetics and taxonomy
Description
Usage
Arguments
Value
Note
Author(s)
References
See Also
Description
This function provides a wrapper to Aliscore, which can be used remove problematic regions of a sequence alignment.
Usage
1
aliscore(x, path)
Arguments
x
DNA sequences of class DNAbin.
path
A character string, giving the path to the Aliscore program.
Value
matrix of class "DNAbin"
Note
This function was developed with ALISCORE version 02.
Author(s)
Christoph Heibl
References
http://zfmk.de/web/Forschung/Abteilungen/AG_Wgele/Software/Aliscore/Download/index.en.html
See Also
gblocks might also be used to clean alignment.
fmichonneau/phyloch documentation built on May 16, 2019, 1:45 p.m.
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Description Usage Arguments Value Note Author(s) References See Also
Description
This function provides a wrapper to Aliscore, which can be used remove problematic regions of a sequence alignment.
Usage
1 | aliscore(x, path)
|
Arguments
x |
DNA sequences of class |
path |
A character string, giving the path to the Aliscore program. |
Value
matrix of class "DNAbin"
Note
This function was developed with ALISCORE version 02.
Author(s)
Christoph Heibl
References
http://zfmk.de/web/Forschung/Abteilungen/AG_Wgele/Software/Aliscore/Download/index.en.html
See Also
gblocks might also be used to clean alignment.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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