code.simple.gaps: Simple Gap/Indel Coding
In fmichonneau/phyloch: Tools for phylogenetics and taxonomy
Description
Usage
Arguments
Value
Author(s)
References
See Also
Description
code.simple.gaps takes an aligned DNA sequence matrix and codes the simple gaps, i.e. gaps that do not overlap with other gaps. The gapped positions are excluded from the matrix and the coded gap characters are appended to the matrix.
Usage
1
code.simple.gaps(x, append = TRUE)
Arguments
x
An object of class DNAbin.
append
Logical.
Value
An object of class DNAbin.
Author(s)
Christoph Heibl
References
Simmons, M.P. & H. Ochoterena. 2000. Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 49(2): 369-381.
See Also
delete.gaps, delete.empty.cells, fillEndsWithN
fmichonneau/phyloch documentation built on May 16, 2019, 1:45 p.m.
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Description Usage Arguments Value Author(s) References See Also
Description
code.simple.gaps takes an aligned DNA sequence matrix and codes the simple gaps, i.e. gaps that do not overlap with other gaps. The gapped positions are excluded from the matrix and the coded gap characters are appended to the matrix.
Usage
1 | code.simple.gaps(x, append = TRUE)
|
Arguments
x |
An object of class |
append |
Logical. |
Value
An object of class DNAbin.
Author(s)
Christoph Heibl
References
Simmons, M.P. & H. Ochoterena. 2000. Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 49(2): 369-381.
See Also
delete.gaps, delete.empty.cells, fillEndsWithN
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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