read.beast.table: Extract node data from BEAST chronogram
In fmichonneau/phyloch: Tools for phylogenetics and taxonomy
Description
Usage
Arguments
Value
Author(s)
See Also
Description
This function reads a BEAST chronogram such as produced by TreeAnnotator and extracts time, rate, and support values for internal and external nodes. Nodes in the resulting data frame are ordered exactly like in the NEXUS file.
Usage
1
read.beast.table(file, digits = 2)
Arguments
file
character string giving the input file, which must be a TreeAnnotaror-generated chronogram in NEXUS format
digits
NULL or integer, if !is.null(digits) values are rounded to the given integer
Value
A matrix; each row corresponds to an internal node, the (ape!)number of which is given in the first column; the remaining columns list the node values extracted from the chronogram.
Author(s)
Christoph Heibl
See Also
read.beast to parse TreeAnnotator output, rbeauti to create XML input for BEAST, HPDbars to plot highest posterior densities on phylogenies.
fmichonneau/phyloch documentation built on May 16, 2019, 1:45 p.m.
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Description Usage Arguments Value Author(s) See Also
Description
This function reads a BEAST chronogram such as produced by TreeAnnotator and extracts time, rate, and support values for internal and external nodes. Nodes in the resulting data frame are ordered exactly like in the NEXUS file.
Usage
1 | read.beast.table(file, digits = 2)
|
Arguments
file |
character string giving the input file, which must be a TreeAnnotaror-generated chronogram in NEXUS format |
digits |
NULL or integer, if |
Value
A matrix; each row corresponds to an internal node, the (ape!)number of which is given in the first column; the remaining columns list the node values extracted from the chronogram.
Author(s)
Christoph Heibl
See Also
read.beast to parse TreeAnnotator output, rbeauti to create XML input for BEAST, HPDbars to plot highest posterior densities on phylogenies.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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