homogen.base.freq: Homogeneity of base frequencies
In fmichonneau/phyloch: Tools for phylogenetics and taxonomy
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Description
This function takes a set of aligned DNA sequences and performs a Chi-square test in order to assess the homogeneity of base frequences among taxa.
Usage
1
homogen.base.freq(x, tabulate.only = FALSE)
Arguments
x
object of class DNAbin
tabulate.only
logical
Details
Sites with missing or ambiguous data are discarded from the alignment prior to the tabulation of bases.
Value
see chisq.test
Author(s)
Christoph Heibl
See Also
delete.empty.cells, delete.gaps
fmichonneau/phyloch documentation built on May 16, 2019, 1:45 p.m.
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Description Usage Arguments Details Value Author(s) See Also
Description
This function takes a set of aligned DNA sequences and performs a Chi-square test in order to assess the homogeneity of base frequences among taxa.
Usage
1 | homogen.base.freq(x, tabulate.only = FALSE)
|
Arguments
x |
object of class |
tabulate.only |
logical |
Details
Sites with missing or ambiguous data are discarded from the alignment prior to the tabulation of bases.
Value
see chisq.test
Author(s)
Christoph Heibl
See Also
delete.empty.cells, delete.gaps
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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