hordeum: Phylogeny of Wild Barley (Hordeum)

In fmichonneau/phyloch: Tools for phylogenetics and taxonomy

Description

A phylogenetic tree of Hordeum based on six nuclear DNA markers.

Usage

data(hordeum)

Format

The format is: List of 17 $ edge : int [1:38, 1:2] 21 21 22 23 24 24 23 22 25 25 ... $ edge.length : num [1:38] 11.584 0.732 2.615 3.734 4.503 ... $ Nnode : int 19 $ tip.label : chr [1:20] "Psathyrostachys" "H.__vulgare" "H.__bulbosum" "H.__murinum" ... $ rate_range_MIN : num [1:19] NA NA 0 0 0 0 0 0 0 0 ... $ rate_range_MAX : num [1:19] NA NA 0.01 0.03 0.01 0.03 0.03 0.03 0.02 0.02 ... $ height_median : num [1:19] 11.42 NA 8.18 4.4 8.45 ... $ height : num [1:19] 11.58 NA 8.24 4.5 8.51 ... $ rate_95 $ rate_95 $ height_95 $ height_95 $ rate_median : num [1:19] NA NA 0 0 0 0 0 0 0 0 ... $ height_range_MIN : num [1:19] 2 NA 1.28 0.43 1.33 0.71 0.67 0.61 0.3 0.09 ... $ height_range_MAX : num [1:19] 24.9 NA 16.6 11.3 17.4 ... $ rate : num [1:19] NA NA 0 0 0 0 0 0 0 0 ... $ posterior : num [1:19] 1 0.44 0.96 1 0.94 1 0.84 1 1 1 ... - attr(*, "class")= chr "phylo"

References

Jakob, S., C. Heibl, D. Roedder & F. Blattner. 2010. Population demography influences climatic niche evolution: evidence from South American Hordeum species (Poaceae). Molecular Ecology 19: 1423-1438.

Examples

data(hordeum)

names(hordeum)

# plot tree
plot(hordeum)
node.support(hordeum$posterior)

fmichonneau/phyloch documentation built on May 16, 2019, 1:45 p.m.