colon_pathwayCollection: Gene Pathway Subset

In gabrielodom/pathwayPCA: Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection

Gene Pathway Subset

Description

An example Canonical Pathways Gene Subset from the Broad Institute: File: c2.cp.v6.0.symbols.gmt.

Usage

data(colon_pathwayCollection)

Format

A pathwayCollection list of two elements:

• pathways : A list of 15 character vectors. Each vector contains the names of the individual genes within that pathway as a vector of character strings.

• TERMS : A character vector of length 15 containing the names of the gene pathways.

Details

This is a subset of 15 pathways from the Broad Institute pathways list. This subset contains seven pathways which are related to the response information in the colonSurv_df data file.

Source

http://software.broadinstitute.org/gsea/msigdb/collections.jsp

gabrielodom/pathwayPCA documentation built on July 10, 2023, 3:32 a.m.