API for gabrielodom/pathwayPCA
Test Pathways for Statistically Significant Relationships

Global functions
AESPCA_pVals Man page
AESPCA_pVals,OmicsPathway-method Man page
OmicsCateg-class Man page
OmicsPathway-class Man page
OmicsReg-class Man page
OmicsSurv-class Man page
adjustRaw_pVals Man page Source code
adjust_and_sort Man page Source code
aespca Man page Source code
colonSurv_df Man page
colon_pathwaySet Man page
convertResponse Source code
coxTrain_fun Man page Source code
coxscor Source code
coxstuff Source code
coxvar Source code
create_Omics Man page Source code
create_OmicsCateg Man page Source code
create_OmicsPath Man page Source code
create_OmicsReg Man page Source code
create_OmicsSurv Man page Source code
create_pathwaySet Man page Source code
expressedOmes Man page
expressedOmes,OmicsPathway-method Man page
extract_aesPCs Man page
extract_aesPCs,OmicsPathway-method Man page
getAssay Man page
getAssay,OmicsPathway-method Man page
getAssay<- Man page
getAssay<-,OmicsPathway-method Man page
getEvent Man page
getEvent,OmicsSurv-method Man page
getEvent<- Man page
getEvent<-,OmicsSurv-method Man page
getEventTime Man page
getEventTime,OmicsSurv-method Man page
getEventTime<- Man page
getEventTime<-,OmicsSurv-method Man page
getPathwaySet Man page
getPathwaySet,OmicsPathway-method Man page
getPathwaySet<- Man page
getPathwaySet<-,OmicsPathway-method Man page
getResponse Man page
getResponse,OmicsPathway-method Man page
getResponse<- Man page
getResponse<-,OmicsPathway-method Man page
glmTrain_fun Man page Source code
lars.lsa Man page Source code
matrixRoot Man page Source code
mysvd Man page Source code
normalize Man page Source code
olsTrain_fun Man page Source code
pathway_pValues Man page Source code
pathway_tControl Man page Source code
pathway_tScores Man page Source code
permTest_OmicsCateg Man page
permTest_OmicsCateg,OmicsCateg-method Man page
permTest_OmicsReg Man page
permTest_OmicsReg,OmicsReg-method Man page
permTest_OmicsSurv Man page
permTest_OmicsSurv,OmicsSurv-method Man page
print.pathwaySet Man page Source code
randomControlSample Man page
read_gmt Man page Source code
sample_Classifresp Man page Source code
sample_Regresp Man page Source code
sample_Survivalresp Man page Source code
show,OmicsPathway-method Man page
superPCA_pVals Man page
superPCA_pVals,OmicsPathway-method Man page
superpc.st Man page Source code
superpc.train Man page Source code
topGenes Man page
topGenes,OmicsPathway-method Man page
transpose_assay Man page Source code
valid_OmicsCateg Man page Source code
valid_OmicsReg Man page Source code
valid_OmicsSurv Man page Source code
weibullMix_optimParams Man page Source code
weibullMix_pValues Man page Source code
gabrielodom/pathwayPCA documentation built on April 23, 2018, 1:10 p.m.