API for gabrielodom/pathwayPCA
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection
| Global functions | |
|---|---|
| .convertPhenoDF | Source code |
| .convertResponse | Source code |
| .coxscor | Source code |
| .coxstuff | Source code |
| .coxvar | Source code |
| .detect_invalid_names | Source code |
| AESPCA_pVals | Man page |
| AESPCA_pVals,OmicsPathway-method | Man page |
| CheckAssay | Man page Source code |
| CheckPwyColl | Man page Source code |
| CheckSampleIDs | Man page Source code |
| Contains | Man page Source code |
| ControlFDR | Man page Source code |
| CreateOmics | Man page Source code |
| CreateOmicsCateg | Man page Source code |
| CreateOmicsPath | Man page Source code |
| CreateOmicsReg | Man page Source code |
| CreateOmicsSurv | Man page Source code |
| CreatePathwayCollection | Man page Source code |
| ExtractAESPCs | Man page |
| ExtractAESPCs,OmicsPathway-method | Man page |
| GumbelMixpValues | Man page Source code |
| IntersectOmicsPwyCollct | Man page |
| IntersectOmicsPwyCollct,OmicsPathway-method | Man page |
| JoinPhenoAssay | Man page Source code |
| LoadOntoPCs | Man page Source code |
| OmicsCateg-class | Man page |
| OmicsPathway-class | Man page |
| OmicsReg-class | Man page |
| OmicsSurv-class | Man page |
| OptimGumbelMixParams | Man page Source code |
| PathwaytValues | Man page Source code |
| PermTestCateg | Man page |
| PermTestCateg,OmicsCateg-method | Man page |
| PermTestReg | Man page |
| PermTestReg,OmicsReg-method | Man page |
| PermTestSurv | Man page |
| PermTestSurv,OmicsSurv-method | Man page |
| RandomControlSample | Man page |
| SE2Tidy | Man page Source code |
| SampleCateg | Man page Source code |
| SampleReg | Man page Source code |
| SampleResponses | Man page Source code |
| SampleSurv | Man page Source code |
| SubsetOmicsPath | Man page |
| SubsetOmicsResponse | Man page |
| SubsetOmicsSurv | Man page |
| SubsetPathwayCollection | Man page |
| SubsetPathwayData | Man page |
| SubsetPathwayData,OmicsPathway-method | Man page |
| SuperPCA_pVals | Man page |
| SuperPCA_pVals,OmicsPathway-method | Man page |
| TabulatepValues | Man page Source code |
| TransposeAssay | Man page Source code |
| ValidOmicsCateg | Man page Source code |
| ValidOmicsReg | Man page Source code |
| ValidOmicsSurv | Man page Source code |
| WhichPathways | Man page Source code |
| [[.pathwayCollection | Man page |
| `[[.pathwayCollection` | Source code |
| aespca | Man page Source code |
| colonSurv_df | Man page |
| colon_pathwayCollection | Man page |
| coxTrain_fun | Man page Source code |
| getAssay | Man page |
| getAssay,OmicsPathway-method | Man page |
| getAssay<- | Man page |
| getAssay<-,OmicsPathway-method | Man page |
| getEvent | Man page |
| getEvent,OmicsSurv-method | Man page |
| getEvent<- | Man page |
| getEvent<-,OmicsSurv-method | Man page |
| getEventTime | Man page |
| getEventTime,OmicsSurv-method | Man page |
| getEventTime<- | Man page |
| getEventTime<-,OmicsSurv-method | Man page |
| getPathPCLs | Man page Source code |
| getPathPCLs.aespcOut | Man page |
| getPathPCLs.superpcOut | Man page Source code |
| getPathpVals | Man page Source code |
| getPathpVals.aespcOut | Man page |
| getPathpVals.superpcOut | Man page Source code |
| getPathwayCollection | Man page |
| getPathwayCollection,OmicsPathway-method | Man page |
| getPathwayCollection<- | Man page |
| getPathwayCollection<-,OmicsPathway-method | Man page |
| getResponse | Man page |
| getResponse,OmicsPathway-method | Man page |
| getResponse<- | Man page |
| getResponse<-,OmicsPathway-method | Man page |
| getSampleIDs | Man page |
| getSampleIDs,OmicsPathway-method | Man page |
| getSampleIDs<- | Man page |
| getSampleIDs<-,OmicsPathway-method | Man page |
| getTrimPathwayCollection | Man page |
| getTrimPathwayCollection,OmicsPathway-method | Man page |
| glmTrain_fun | Man page Source code |
| lars.lsa | Man page Source code |
| mysvd | Man page Source code |
| normalize | Man page Source code |
| olsTrain_fun | Man page Source code |
| pathwayPCA | Man page |
| pathway_tControl | Man page Source code |
| pathway_tScores | Man page Source code |
| print.pathwayCollection | Man page Source code |
| read_gmt | Man page Source code |
| show,OmicsPathway-method | Man page |
| superpc.st | Man page Source code |
| superpc.train | Man page Source code |
| wikipwsHS_Entrez_pathwayCollection | Man page |
| wikipwsHS_Symbol_pathwayCollection | Man page |
| write_gmt | Man page Source code |
