API for gabrielodom/pathwayPCA
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection

Global functions
AESPCA_pVals Man page
AESPCA_pVals,OmicsPathway-method Man page
CheckAssay Man page Source code
CheckPwyColl Man page Source code
CheckSampleIDs Man page Source code
ControlFDR Man page Source code
CreateOmics Man page Source code
CreateOmicsCateg Man page Source code
CreateOmicsPath Man page Source code
CreateOmicsReg Man page Source code
CreateOmicsSurv Man page Source code
CreatePathwayCollection Man page Source code
ExtractAESPCs Man page
ExtractAESPCs,OmicsPathway-method Man page
GumbelMixpValues Man page Source code
IntersectOmicsPwyCollct Man page
IntersectOmicsPwyCollct,OmicsPathway-method Man page
JoinPhenoAssay Man page Source code
LoadOntoPCs Man page Source code
OmicsCateg-class Man page
OmicsPathway-class Man page
OmicsReg-class Man page
OmicsSurv-class Man page
OptimGumbelMixParams Man page Source code
PermTestCateg Man page
PermTestCateg,OmicsCateg-method Man page
PermTestReg Man page
PermTestReg,OmicsReg-method Man page
PermTestSurv Man page
PermTestSurv,OmicsSurv-method Man page
RandomControlSample Man page
SampleCateg Man page Source code
SampleReg Man page Source code
SampleResponses Man page Source code
SampleSurv Man page Source code
SubsetOmicsPath Man page
SubsetOmicsResponse Man page
SubsetOmicsSurv Man page
SubsetPathwayCollection Man page
SubsetPathwayData Man page
SubsetPathwayData,OmicsPathway-method Man page
SuperPCA_pVals Man page
SuperPCA_pVals,OmicsPathway-method Man page
TabulatepValues Man page Source code
TransposeAssay Man page Source code
ValidOmicsCateg Man page Source code
ValidOmicsReg Man page Source code
ValidOmicsSurv Man page Source code
[[.pathwayCollection Man page
aespca Man page Source code
colonSurv_df Man page
colon_pathwayCollection Man page
convertPhenoDF Source code
convertResponse Source code
coxTrain_fun Man page Source code
coxscor Source code
coxstuff Source code
coxvar Source code
detect_invalid_names Source code
getAssay Man page
getAssay,OmicsPathway-method Man page
getAssay<- Man page
getAssay<-,OmicsPathway-method Man page
getEvent Man page
getEvent,OmicsSurv-method Man page
getEvent<- Man page
getEvent<-,OmicsSurv-method Man page
getEventTime Man page
getEventTime,OmicsSurv-method Man page
getEventTime<- Man page
getEventTime<-,OmicsSurv-method Man page
getPathPCLs Man page Source code
getPathPCLs.aespcOut Man page
getPathPCLs.superpcOut Man page Source code
getPathwayCollection Man page
getPathwayCollection,OmicsPathway-method Man page
getPathwayCollection<- Man page
getPathwayCollection<-,OmicsPathway-method Man page
getResponse Man page
getResponse,OmicsPathway-method Man page
getResponse<- Man page
getResponse<-,OmicsPathway-method Man page
getSampleIDs Man page
getSampleIDs,OmicsPathway-method Man page
getSampleIDs<- Man page
getSampleIDs<-,OmicsPathway-method Man page
getTrimPathwayCollection Man page
getTrimPathwayCollection,OmicsPathway-method Man page
glmTrain_fun Man page Source code
lars.lsa Man page Source code
mysvd Man page Source code
normalize Man page Source code
olsTrain_fun Man page Source code
pathwayPCA Man page
pathwayPCA-package Man page
pathway_tControl Man page Source code
pathway_tScores Man page Source code
print.pathwayCollection Man page Source code
read_gmt Man page Source code
show,OmicsPathway-method Man page
superpc.st Man page Source code
superpc.train Man page Source code
wikipwsHS_Entrez_pathwayCollection Man page
write_gmt Man page Source code
gabrielodom/pathwayPCA documentation built on Jan. 10, 2019, 9:39 p.m.