Man pages for gamerino/NBSplice
Negative Binomial Models to detect Differential Splicing
| designMatrix | An example of a design matrix helpful to demonstrate the use... |
| geneIso | An example of isoform-gene relationship specification helpful... |
| isoCountsData | An example of an isoform counts matrix helpful to demonstrate... |
| IsoDataSet-buildLowExpIdx | IsoDataSet low expressed isoforms detection. |
| IsoDataSet-class | IsoDataSet S4 class implementation in R |
| IsoDataSet-constructor | IsoDataSet constructor |
| IsoDataSet-core | GLM fitting and hypothesis testing |
| IsoDataSet-getters | Getters for an IsoDataSet object. |
| IsoDataSet-initialize | IsoDataSet object constructor. |
| IsoDataSet-NBTest | Differential splicing analysis. |
| IsoDataSet-print | Print an IsoDataSet object. |
| IsoDataSet-show | Show method for the IsoDataSet class. |
| myDSResults | An example of an NBSpliceRes object. |
| myIsoDataSet | An example of an IsoDataSet object. |
| NBSplice-package | NBSplice: Negative Binomial Models to detect Differential... |
| NBSpliceRes-class | NBSpliceRes S4 class implementation in R |
| NBSpliceRes-constructor | NBSpliceRes constructor |
| NBSpliceRes-GetDSGenes | Get differentially spliced genes. |
| NBSpliceRes-GetDSResults | Get differential expression results of significant genes. |
| NBSpliceRes-GetGeneResults | Get differentially spliced genes. |
| NBSpliceRes-getters | Getters for an NBSpliceRes object. |
| NBSpliceRes-initialize | NBSpliceRes object constructor. |
| NBSpliceRes-plotGeneResults | Method to obtain isoform's relative expression barplot for an... |
| NBSpliceRes-plotRatiosDisp | Plot the dispersion of isoform's relative expression for... |
| NBSpliceRes-plotVolcano | Method to obtain the Volcano Plot. |
| NBSpliceRes-print | Print an NBSpliceRes object. |
| NBSpliceRes-show | Show method for the NBSpliceRes class. |
| totalGeneCounts | Auxiliary function to build gene expression matrix |
