NBSpliceRes-getters: Getters for an NBSpliceRes object.

In gamerino/NBSplice: Negative Binomial Models to detect Differential Splicing

Description

Obtain information about NBSpliceRes slots, according to the given function call.

Usage

results(object, filter = TRUE)

## S4 method for signature 'NBSpliceRes'
results(object, filter = TRUE)

contrast(object)

## S4 method for signature 'NBSpliceRes'
contrast(object)

## S4 method for signature 'NBSpliceRes'
lowExpIndex(object)

disp(object)

## S4 method for signature 'NBSpliceRes'
disp(object)

Arguments

object	NBSpliceRes class object.
filter	Logical indicating if low expressed isoforms should be filtered out.

Value

according to the call one of the following objects can be returned

data.frame	NBTest results.
numeric	Index of low expressed isoforms.
character	Experiment contrast.
numeric	Estimated gene dispersion.

Note

see full example in NBSpliceRes-class

Author(s)

Gabriela A. Merino [e-mail] and Elmer A. Fernandez [e-mail]

Examples

data(myDSResults, package="NBSplice")

## Getting results slot filtering the low expressed isoforms
myResults<-results(myDSResults)

## Getting results slot keeping the low expressed isoforms
myResults<-results(myDSResults, filter=FALSE)
## Getting the contrast slot
myContrast<-contrast(myDSResults)
## Getting the lowExpIndex slot
myLowExpIndex<-lowExpIndex(myDSResults)

## Getting the dispersion slot
myDispersion<-disp(myDSResults)

gamerino/NBSplice documentation built on Sept. 10, 2021, 10:21 p.m.