NBSpliceRes-getters: Getters for an NBSpliceRes object.

Description Usage Arguments Value Note Author(s) Examples

Description

Obtain information about NBSpliceRes slots, according to the given function call.

Usage

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results(object, filter = TRUE)

## S4 method for signature 'NBSpliceRes'
results(object, filter = TRUE)

contrast(object)

## S4 method for signature 'NBSpliceRes'
contrast(object)

## S4 method for signature 'NBSpliceRes'
lowExpIndex(object)

disp(object)

## S4 method for signature 'NBSpliceRes'
disp(object)

Arguments

object

NBSpliceRes class object.

filter

Logical indicating if low expressed isoforms should be filtered out.

Value

according to the call one of the following objects can be returned

data.frame

NBTest results.

numeric

Index of low expressed isoforms.

character

Experiment contrast.

numeric

Estimated gene dispersion.

Note

see full example in NBSpliceRes-class

Author(s)

Gabriela A. Merino merino.gabriela33@gmail.com and Elmer A. Fernandez efernandez@bdmg.com.ar

Examples

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data(myDSResults, package="NBSplice")

## Getting results slot filtering the low expressed isoforms
myResults<-results(myDSResults)

## Getting results slot keeping the low expressed isoforms
myResults<-results(myDSResults, filter=FALSE)
## Getting the contrast slot
myContrast<-contrast(myDSResults)
## Getting the lowExpIndex slot
myLowExpIndex<-lowExpIndex(myDSResults)

## Getting the dispersion slot
myDispersion<-disp(myDSResults)

gamerino/NBSplice documentation built on Sept. 10, 2021, 10:21 p.m.