NBSpliceRes-plotVolcano: Method to obtain the Volcano Plot.

In gamerino/NBSplice: Negative Binomial Models to detect Differential Splicing

Description

plotVolcano returns a generalized volcano plot where the x-axis represents the difference between isoform's relative expression in the contrasted conditions. Isoforms are colored according to the differential splicing status of the gene where they come from.

Usage

plotVolcano(myNBRes, adjusted = TRUE, p.value = 0.05)

## S4 method for signature 'NBSpliceRes'
plotVolcano(myNBRes, adjusted = TRUE,
    p.value = 0.05)

Arguments

myNBRes	NBSpliceRes class object.
adjusted	Logical indicating if adjusted p values should be used.
p.value	Numeric value between 0 and 1 giving the required family-wise error rate or false discovery rate.

Value

A ggplot object.

Note

see full example in NBSpliceRes-class

Author(s)

Gabriela A. Merino [e-mail] and Elmer A. Fernandez [e-mail]

See Also

NBSpliceRes

Other NBSpliceRes: GetDSGenes, GetDSResults, GetGeneResults, NBSpliceRes-class, NBSpliceRes-initialize, NBSpliceRes, myDSResults, plotGeneResults, plotRatiosDisp

Examples

data(myDSResults, package="NBSplice")

g<-plotVolcano(myDSResults)
if(interactive()){
g
}

gamerino/NBSplice documentation built on Sept. 10, 2021, 10:21 p.m.