NBSpliceRes-initialize: NBSpliceRes object constructor.

In gamerino/NBSplice: Negative Binomial Models to detect Differential Splicing

Description

initialize creates an NBSpliceRes object

Usage

## S4 method for signature 'NBSpliceRes'
initialize(.Object, results, lowExpIndex, contrast,
    dispersion)

Arguments

.Object	NBSpliceRes class object.
results	Data.frame with NBTest results of expressed isoforms.
lowExpIndex	Numeric indicating the positions of low expressed isoforms.
contrast	Character indicating the contrast used for NBTest.
dispersion	Numeric with the estimated gene dispersions.

Value

NBSpliceRes object.

Note

see full example in NBSpliceRes-class

Author(s)

Gabriela A. Merino [e-mail] and Elmer A. Fernandez [e-mail]

See Also

NBSpliceRes

Other NBSpliceRes: GetDSGenes, GetDSResults, GetGeneResults, NBSpliceRes-class, NBSpliceRes, myDSResults, plotGeneResults, plotRatiosDisp, plotVolcano

Examples

data(myDSResults, package="NBSplice")
myResults<-results(myDSResults, filter=FALSE)
myLowExpIdx<-lowExpIndex(myDSResults)
myContrast<-contrast(myDSResults)

myNewDSResults<-NBSpliceRes(myResults, myLowExpIdx, myContrast)

gamerino/NBSplice documentation built on Sept. 10, 2021, 10:21 p.m.