NBSpliceRes-GetDSGenes: Get differentially spliced genes.

In gamerino/NBSplice: Negative Binomial Models to detect Differential Splicing

Description

GetDSGenes returns the list of genes identified as differentially spliced.

Usage

GetDSGenes(myNBRes, adjusted = TRUE, p.value = 0.05)

## S4 method for signature 'NBSpliceRes'
GetDSGenes(myNBRes, adjusted = TRUE, p.value = 0.05)

Arguments

myNBRes	NBSpliceRes class object.
adjusted	Logical indicating if adjusted p values should be used.
p.value	Numeric value between 0 and 1 giving the required family-wise error rate or false discovery rate.

Value

A character with the names of differentially spliced genes.

Note

see full example in NBSpliceRes-class

Author(s)

Gabriela A. Merino [e-mail] and Elmer A. Fernandez [e-mail]

See Also

NBSpliceRes

Other NBSpliceRes: GetDSResults, GetGeneResults, NBSpliceRes-class, NBSpliceRes-initialize, NBSpliceRes, myDSResults, plotGeneResults, plotRatiosDisp, plotVolcano

Examples

data(myDSResults, package="NBSplice")

myDSGenes<-GetDSGenes(myDSResults)

gamerino/NBSplice documentation built on Sept. 10, 2021, 10:21 p.m.