NBSpliceRes-constructor: NBSpliceRes constructor

In gamerino/NBSplice: Negative Binomial Models to detect Differential Splicing

Description

NBSpliceRes creates an object to store the results of differential expression analysis performed by the NBTest function.

Usage

NBSpliceRes(results, lowExpIndex, contrast, dispersion)

Arguments

results	Data.frame with NBTest results of expressed isoforms.
lowExpIndex	Numeric indicating the positions of low expressed isoforms.
contrast	Character indicating the contrast used for NBTest.
dispersion	Numeric with the estimated gene dispersions.

Value

NBSpliceRes object.

Note

see full example in NBSpliceRes-class

Author(s)

Gabriela A. Merino [e-mail], and Elmer A. Fernandez [e-mail]

See Also

NBSpliceRes-class

Other NBSpliceRes: GetDSGenes, GetDSResults, GetGeneResults, NBSpliceRes-class, NBSpliceRes-initialize, myDSResults, plotGeneResults, plotRatiosDisp, plotVolcano

Examples

data(myDSResults, package="NBSplice")
myResults<-results(myDSResults, filter=FALSE)
myLowExpIdx<-lowExpIndex(myDSResults)
myContrast<-contrast(myDSResults)
myDispersion<-disp(myDSResults)
myNewDSResults<-NBSpliceRes(myResults, myLowExpIdx, myContrast, myDispersion)

gamerino/NBSplice documentation built on Sept. 10, 2021, 10:21 p.m.