classifyDE: Classify DE result

Description Usage Arguments Value

View source: R/doDE_helper_functions.R

Description

Given DE data for various contrasts (ctr), each of the contrasts will be classified as lethal, beneficial or neutral from l2fc and p-value based on parameters passed in from param (l_thr, p_thr). Based on a group of (overall) contrasts (overall_ctr) number of beneficial, lethal or neutral shRNAs in a group of contrasts is counted and classified as lethal, beneficial and neutral using overall_thr parameter.

Usage

1
classifyDE(de, param, ctr, overall_ctr)

Arguments

de

An object of ("trimmed") results in the form as returned by scrapeDEresults.

param

A data.frame of parameters used during classification.

ctr

A data.frame of contrasts used for constructing DE.

overall_ctr

A data.frame of overall contrasts

Value

A data.frame with classified results.


genialis/shRNAde documentation built on Dec. 11, 2018, 1:34 a.m.