Description Usage Arguments Value
Given DE data for various contrasts (ctr
), each of the contrasts will be classified as lethal, beneficial
or neutral from l2fc and p-value based on parameters passed in from param
(l_thr
, p_thr
).
Based on a group of (overall) contrasts (overall_ctr
) number of beneficial, lethal or neutral shRNAs in a group of
contrasts is counted and classified as lethal, beneficial and neutral using overall_thr
parameter.
1 | classifyDE(de, param, ctr, overall_ctr)
|
de |
An object of ("trimmed") results in the form as returned by scrapeDEresults. |
param |
A data.frame of parameters used during classification. |
ctr |
A data.frame of contrasts used for constructing DE. |
overall_ctr |
A data.frame of overall contrasts |
A data.frame with classified results.
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