importExpressionsData: Import expression data based on sample key.
In genialis/shRNAde: Functions needed to support the shRNA pipeline in rewolwe-bio
Description
Usage
Arguments
Value
Description
Imports expression data based on sample name specified in sample_key. It takes sample
name from sample_key and tries to match the name in sample_list. For final
output, results are merged based on shRNA.
Usage
1
importExpressionsData(sample_key, sample_list = NULL)
Arguments
sample_key
A data.frame with columns sample_name, <groups>* and replicate. Number of
columns for groups may vary.
sample_list
Character. Vector of absolute or relative paths to sample count matrices. If
NULL, subfolder ./data is search for all files ending in .txt.
Value
A data.frame of shRNA counts for selected samples.
genialis/shRNAde documentation built on May 3, 2019, 7:39 p.m.
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Description Usage Arguments Value
Description
Imports expression data based on sample name specified in sample_key. It takes sample
name from sample_key and tries to match the name in sample_list. For final
output, results are merged based on shRNA.
Usage
1 | importExpressionsData(sample_key, sample_list = NULL)
|
Arguments
sample_key |
A data.frame with columns sample_name, <groups>* and replicate. Number of columns for groups may vary. |
sample_list |
Character. Vector of absolute or relative paths to sample count matrices. If NULL, subfolder ./data is search for all files ending in .txt. |
Value
A data.frame of shRNA counts for selected samples.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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