importExpressionsData: Import expression data based on sample key.

Description Usage Arguments Value

View source: R/doDE_helper_functions.R

Description

Imports expression data based on sample name specified in sample_key. It takes sample name from sample_key and tries to match the name in sample_list. For final output, results are merged based on shRNA.

Usage

1
importExpressionsData(sample_key, sample_list = NULL)

Arguments

sample_key

A data.frame with columns sample_name, <groups>* and replicate. Number of columns for groups may vary.

sample_list

Character. Vector of absolute or relative paths to sample count matrices. If NULL, subfolder ./data is search for all files ending in .txt.

Value

A data.frame of shRNA counts for selected samples.


genialis/shRNAde documentation built on Dec. 11, 2018, 1:34 a.m.