differentialExpression: Perform differential expression based on specified design
In genialis/shRNAde: Functions needed to support the shRNA pipeline in rewolwe-bio
Description
Usage
Arguments
Value
Description
Based on provided contrasts, provide differential expression.
Usage
1
2
differentialExpression(contrasts, sample_key, data, design = ~0 + group +
replicate)
Arguments
contrasts
A vector of contrasts (length of 2) for group 1 and group 2.
sample_key
Data.frame. A data.frame as returned by importSampleKey.
data
Count data from importCountData.
design
Design used to perform differential expression.
Value
A list of DESeq results as returned by DESeq2::results.
genialis/shRNAde documentation built on May 3, 2019, 7:39 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Based on provided contrasts, provide differential expression.
Usage
1 2 | differentialExpression(contrasts, sample_key, data, design = ~0 + group +
replicate)
|
Arguments
contrasts |
A vector of contrasts (length of 2) for group 1 and group 2. |
sample_key |
Data.frame. A data.frame as returned by |
data |
Count data from |
design |
Design used to perform differential expression. |
Value
A list of DESeq results as returned by DESeq2::results.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.