differentialExpression: Perform differential expression based on specified design

Description Usage Arguments Value

View source: R/doDE_helper_functions.R

Description

Based on provided contrasts, provide differential expression.

Usage

1
2
differentialExpression(contrasts, sample_key, data, design = ~0 + group +
  replicate)

Arguments

contrasts

A vector of contrasts (length of 2) for group 1 and group 2.

sample_key

Data.frame. A data.frame as returned by importSampleKey.

data

Count data from importCountData.

design

Design used to perform differential expression.

Value

A list of DESeq results as returned by DESeq2::results.


genialis/shRNAde documentation built on Dec. 11, 2018, 1:34 a.m.