makeLibrary: Create library of shRNA

Description Usage Arguments Value

View source: R/makeLibrary.R

Description

Take a raw file and convert it to a valid fasta format. This file is necessary for performing alignment.

Usage

1
makeLibrary(input, output = NULL)

Arguments

input

A raw file of three columns where first value is shRNA, second value is gene name and third value is sequence.

output

Character. Optional. If a character string of length one is supplied, it is stripped of file extension and appended fasta. If NULL, name of input is used, where .fasta extension is appended and written to working directory.

Value

Returns link to file of the library, which has been written to working directory or path specified in output as a side effect.


genialis/shRNAde documentation built on Dec. 7, 2018, 8 a.m.