pcalogit_perf: Classification logistic model for simulated dataset of DMPs...

pcalogit_perfR Documentation

Classification logistic model for simulated dataset of DMPs used in examples

Description

This data/object carries the information about the classification performance of the combined models of Principal Components PCA and logistic regression analyses on the set of dmps.

Usage

pcalogit_perf

Format

pcalogit_perf is an object from class "pcaLogisticR", consisting of a list with the following elements:

Performance

Classification performance of the "pca.logistic" model on the set of dmps

.

FDR

False discovery rate estimated for the logistic model on the set of dmps

model

The fitted glm "logistic" and the "PCA" models. The "PCA" is fitted with prcomp

function.

pcalogit_perf is an object from "pcaLogisticR" class, which was obtained applying evaluateDIMPclass function on the set of dmps.


genomaths/MethylIT documentation built on Feb. 3, 2024, 1:24 a.m.