coalescent.intervals.datedPhylo: coalescent.intervals.datedPhylo
In georgeshirreff/multiNe: Multiple Ne estimators
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Functions to find the skyline of a binary, rooted tree with heterochronous
tips, i.e. sequences were sampled sequentially in time.
The likelihood function is based on Equations 3 and 4 in
Drummond et al (2005) Mol. Biol. Evol.
Usage
1
2
## S3 method for class 'datedPhylo'
coalescent.intervals(tr)
Arguments
tr:
a phylogeny of class "datedPhylo"
Value
A datedCI object with coalescent intervals in units of substitutions.
Author(s)
Lucy Mengqi Li <mengqi.li09@imperial.ac.uk>
Examples
1
library(ape)
georgeshirreff/multiNe documentation built on May 17, 2019, 1:15 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Functions to find the skyline of a binary, rooted tree with heterochronous
tips, i.e. sequences were sampled sequentially in time.
The likelihood function is based on Equations 3 and 4 in
Drummond et al (2005) Mol. Biol. Evol.
Usage
1 2 | ## S3 method for class 'datedPhylo'
coalescent.intervals(tr)
|
Arguments
tr: |
a phylogeny of class "datedPhylo" |
Value
A datedCI object with coalescent intervals in units of substitutions.
Author(s)
Lucy Mengqi Li <mengqi.li09@imperial.ac.uk>
Examples
1 | library(ape)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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