simG3: simG3

In georgeshirreff/multiNe: Multiple Ne estimators

Description

Genind object. Microsatellite data set: two loci, 50 individuals sampled each in three consecutive generations. Simulated with rmetasim: sampled after 1000 generations. Mu = 0.01

Usage

data("simG3")

Format

The format is: Formal class 'genind' [package "adegenet"] with 14 slots ..@ strata : NULL ..@ hierarchy: NULL ..@ tab : int [1:150, 1:10] 1 0 1 1 1 0 0 1 1 1 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:150] "331" "247" "865" "256" ... .. .. ..$ : chr [1:10] "L1.0" "L1.1" "L1.4" "L1.2" ... ..@ loc.names: chr [1:2] "L1" "L2" ..@ loc.fac : Factor w/ 2 levels "L1","L2": 1 1 1 1 1 2 2 2 2 2 ..@ loc.nall : Named int [1:2] 5 5 .. ..- attr(*, "names")= chr [1:2] "L1" "L2" ..@ all.names:List of 2 .. ..$ L1: chr [1:5] "0" "1" "4" "2" ... .. ..$ L2: chr [1:5] "2" "3" "1" "0" ... ..@ call : language repool(g0S, g1S, g2S) ..@ ind.names: chr [1:150] "331" "247" "865" "256" ... ..@ pop : Factor w/ 3 levels "0","1","2": 1 1 1 1 1 1 1 1 1 1 ... ..@ pop.names: chr [1:3] "0" "1" "2" ..@ ploidy : int [1:150] 2 2 2 2 2 2 2 2 2 2 ... ..@ type : chr "codom" ..@ other : NULL

Examples

data(simG3)
## maybe str(simG3) ; plot(simG3) ...

georgeshirreff/multiNe documentation built on May 17, 2019, 1:15 a.m.