simulate.tree: simulate.tree

In georgeshirreff/multiNe: Multiple Ne estimators

Description

Simulates genealogies under the coalescent

Usage

## S3 method for class 'tree'
simulate(n = 10, N = 1, sampling = "iso",
  args = "-T -G 0.1", Ne = 1, max = 1, simulator = NULL,
  sample = NULL, ...)

Arguments

n	Number of samples
N	Number of genealogies or trees
sampling	It can take two values: iso or hetero. If the sampling scheme is (iso) it generates an isochronous genealogy (all samples at time 0). Otherwise, it assumes it is heterochronous sampling.If hetero, you need to specify samples
args	String of characters for ms
Ne	The standard is set to 1. It takes any function as input for the demographic model
max	(optional) for thinning simulator. It is an upper bound on 1/Ne
simulator	It can either be null, ms or thinning. If null, it uses ape rcoal.
sample	It takes a matrix of two columns. The first column inciates the number of samples and the second column the sampling times

Author(s)

Julia Palacios [e-mail]

georgeshirreff/multiNe documentation built on May 17, 2019, 1:15 a.m.