sequence.wrapper: sequence.wrapper

Description Usage Arguments Value Author(s) Examples

View source: R/sequencewrapper.R

Description

A wrapper function for the sequence simulator programs ms, seqgen, simSeq, and PhyloSim.

Usage

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sequence.wrapper(n = 10, L = 10, method = "", ms.args = NULL,
  tree = NULL, pi.n = 0.25, kappa = "", outfile = "out",
  ancseq = NULL, rate.in = 1)

Arguments

n

number of sequences

L

length of sequence

method

choice of sequence simulation

ms.args

arguments passed to ms

tree

tree of format phylo

outfile

name of the file that writes out

Value

Writes out sequences in phylip format to your working directory.

Author(s)

Rebecca Harris <rbharris@uw.edu>

Examples

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library(phyclust)

georgeshirreff/multiNe documentation built on May 17, 2019, 1:15 a.m.