simG: simG

In georgeshirreff/multiNe: Multiple Ne estimators

Description

Genind object. Microsatellite data set for 50 diploid individuals: two loci, sampled in the same generation. Simulated with rmetasim: sampled after 1000 generations. Mu = 0.01

Usage

data("simG")

Format

The format is: Formal class 'genind' [package "adegenet"] with 14 slots ..@ strata : NULL ..@ hierarchy: NULL ..@ tab : int [1:50, 1:12] 1 0 1 1 1 0 0 1 1 1 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:50] "331" "247" "865" "256" ... .. .. ..$ : chr [1:12] "L1.0" "L1.1" "L1.2" "L1.3" ... ..@ loc.names: chr [1:2] "L1" "L2" ..@ loc.fac : Factor w/ 2 levels "L1","L2": 1 1 1 1 1 1 2 2 2 2 ... ..@ loc.nall : Named int [1:2] 6 6 .. ..- attr(*, "names")= chr [1:2] "L1" "L2" ..@ all.names:List of 2 .. ..$ L1: chr [1:6] "0" "1" "2" "3" ... .. ..$ L2: chr [1:6] "0" "1" "2" "3" ... ..@ call : language .local(x = x, i = i, j = j, drop = drop) ..@ ind.names: chr [1:50] "331" "247" "865" "256" ... ..@ pop : Factor w/ 1 level "0": 1 1 1 1 1 1 1 1 1 1 ... ..@ pop.names: chr "0" ..@ ploidy : int [1:50] 2 2 2 2 2 2 2 2 2 2 ... ..@ type : chr "codom" ..@ other : list()

Examples

data(simG)
## maybe str(simG) ; plot(simG) ...

georgeshirreff/multiNe documentation built on May 17, 2019, 1:15 a.m.