API for ggloor/ALDEx_bioc
Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account
| Global functions | |
|---|---|
| ALDEx2m | Man page |
| ALDEx2m-package | Man page |
| aitchison.mean | Source code |
| aldex | Man page Source code |
| aldex.clr | Man page |
| aldex.clr,RangedSummarizedExperiment-method | Man page |
| aldex.clr,data.frame-method | Man page |
| aldex.clr,matrix-method | Man page |
| aldex.clr-class | Man page |
| aldex.clr.function | Man page Source code |
| aldex.corr | Man page Source code |
| aldex.effect | Man page Source code |
| aldex.expectedDistance | Man page Source code |
| aldex.glm | Man page Source code |
| aldex.glm.effect | Man page Source code |
| aldex.glm.plot | Man page |
| aldex.kw | Man page Source code |
| aldex.makeScaleMatrix | Man page Source code |
| aldex.plot | Man page |
| aldex.plotFeature | Man page Source code |
| aldex.senAnalysis | Man page Source code |
| aldex.set.mode | Man page Source code |
| aldex.ttest | Man page Source code |
| all.features | Source code |
| default.scale.model | Source code |
| extract | Source code |
| getConditions | Man page |
| getConditions,aldex.clr-method | Man page |
| getDenom | Man page |
| getDenom,aldex.clr-method | Man page |
| getDirichletInstances | Man page |
| getDirichletInstances,aldex.clr-method | Man page |
| getDirichletReplicate | Man page |
| getDirichletReplicate,aldex.clr,numeric-method | Man page |
| getDirichletSample | Man page |
| getDirichletSample,aldex.clr,numeric-method | Man page |
| getFeatureNames | Man page |
| getFeatureNames,aldex.clr-method | Man page |
| getFeatures | Man page |
| getFeatures,aldex.clr-method | Man page |
| getMonteCarloInstances | Man page |
| getMonteCarloInstances,aldex.clr-method | Man page |
| getMonteCarloReplicate | Man page |
| getMonteCarloReplicate,aldex.clr,numeric-method | Man page |
| getMonteCarloSample | Man page |
| getMonteCarloSample,aldex.clr,numeric-method | Man page |
| getReads | Man page |
| getReads,aldex.clr-method | Man page |
| getSampleIDs | Man page |
| getSampleIDs,aldex.clr-method | Man page |
| getScaleSamples | Man page |
| getScaleSamples,aldex.clr-method | Man page |
| gm | Source code |
| house.features | Source code |
| interpretGamma | Man page Source code |
| iqlr.features | Source code |
| lr2glm | Source code |
| numConditions | Man page |
| numConditions,aldex.clr-method | Man page |
| numFeatures | Man page |
| numFeatures,aldex.clr-method | Man page |
| numMCInstances | Man page |
| numMCInstances,aldex.clr-method | Man page |
| plotGamma | Man page Source code |
| progress | Source code |
| rdirichlet | Source code |
| selex | Man page |
| synth2 | Man page |
| t.fast | Source code |
| validReads | Source code |
| wilcox.fast | Source code |
| zero.features | Source code |
