Man pages for ggloor/ALDEx_bioc
Analysis Of Differential Abundance Taking Sample Variation Into Account

aldexCompute an 'aldex' Object
ALDEx2m-packageAnalysis of differential abundance taking sample variation...
aldex.clr-classThe aldex.clr class
aldex.clr.function-methodsCompute an 'aldex.clr' Object
aldex.corrCalculate correlation with a continuous variable
aldex.effectcalculate effect sizes and differences between conditions
aldex.glmCalculate glm test statistics using a 'model.matrix'
aldex.kwCalculate the Kruskal-Wallis test and glm ANOVA statistics
aldex.set.modeidentify set of denominator features for log-ratio...
aldex.ttestCalculate Wilcoxon Rank Sum test and Welch's t-test...
getDenom-methodgetDenom
getFeatureNames-methodgetFeatureNames
getFeatures-methodgetFeatures
getMonteCarloInstances-methodgetMonteCarloInstances
getMonteCarloReplicate-methodgetMonteCarloReplicate
getReads-methodgetReads
getSampleIDs-methodgetSampleIDs
numConditions-methodnumConditions
numFeatures-methodnumFeatures
numMCInstances-methodnumMCInstances
plot.aldexPlot an 'aldex' Object
selexSelection-based differential sequence variant abundance...
synth2Synthetic asymmetric dataset
ggloor/ALDEx_bioc documentation built on Nov. 13, 2018, 1:19 p.m.