getDirichletReplicate-method: getDirichletReplicate

In ggloor/ALDEx_bioc: Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

getDirichletReplicate

Description

Returns the raw per-sample Monte Carlo Dirichlet replicates generated from analysis, for an aldex.clr object.

Usage

  getDirichletReplicate(.object,i)

Arguments

.object	A aldex.clr object containing the Monte Carlo Dirichlet replicates derived from estimating the technical variance of the raw read count data, along with sample and feature information.
i	The numeric index of the desired sample replicate.

Details

Returns the raw per-sample Monte Carlo Dirichlet replicates. These are estimated probabilities.

Value

A numeric matrix.

See Also

aldex.clr

Examples

data(selex)
    #subset for efficiency
    selex <- selex[1201:1600,]
conds <- c(rep("NS", 7), rep("S", 7))
x <- aldex.clr(selex, conds, mc.samples = 2, denom = "all", verbose = FALSE)
DirichletReplicate <- getDirichletReplicate(x,1)

ggloor/ALDEx_bioc documentation built on Oct. 31, 2023, 1:13 a.m.