getSampleIDs-method: getSampleIDs

In ggloor/ALDEx_bioc: Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

getSampleIDs

Description

Returns the names of the samples for an aldex.clr object. These can be used to access the original reads, as in reads\$sampleID (if the reads are a data frame).

Usage

  getSampleIDs(.object)

Arguments

.object

A aldex.clr object.

Details

Returns the names of the samples. These can be used to access the original reads, as in reads\$sampleID (if the reads are a data frame).

Value

A vector of sample names.

See Also

aldex.clr

Examples

data(selex)
    #subset for efficiency
    selex <- selex[1201:1600,]
conds <- c(rep("NS", 7), rep("S", 7))
x <- aldex.clr(selex, conds, mc.samples = 2, denom = "all", verbose = FALSE)
sampleIDs <- getSampleIDs(x)

ggloor/ALDEx_bioc documentation built on Oct. 31, 2023, 1:13 a.m.