Files in ggloor/ALDEx_bioc
Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account
.DS_Store
.Rbuildignore
.gitignore
ALDEx2.Rproj
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R
R/AllGenerics.R
R/aldex-scaleSim.R
R/aldex.r
R/clr_corr.R
R/clr_effect.r
R/clr_function.r
R/clr_glm-tpq.R
R/clr_glm.r
R/clr_ttest.r
R/expectedDistance.aldex.r
R/glm_effect.r
R/iqlr_features.r
R/makeScaleMatrix.r
R/plot.aldex.glm.r
R/plot.aldex.r
R/plotFeature.aldex.r
R/progress.R
R/rdirichlet.r
R/stats.fast.R
README.Rmd
README.md
data/.DS_Store
data/selex.txt.gz
data/synth2.txt.gz
inst/CITATION
man/.DS_Store
man/ALDEx2m-package.Rd
man/aldex.Rd
man/aldex.clr-class.Rd
man/aldex.clr.function.Rd
man/aldex.corr.Rd
man/aldex.effect.Rd
man/aldex.expectedDistance.Rd
man/aldex.glm.Rd
man/aldex.glm.effect.Rd
man/aldex.glm.plot.Rd
man/aldex.kw.Rd
man/aldex.makeScaleMatrix.Rd
man/aldex.plot.Rd
man/aldex.plotFeature.Rd
man/aldex.senAnalysis.Rd
man/aldex.set.mode.Rd
man/aldex.ttest.Rd
man/getConditions-method.Rd
man/getDenom-method.Rd
man/getDirichletInstances-method.Rd
man/getDirichletReplicate-method.Rd
man/getDirichletSample-method.Rd
man/getFeatureNames-method.Rd
man/getFeatures-method.Rd
man/getMonteCarloInstances-method.Rd
man/getMonteCarloReplicate-method.Rd
man/getMonteCarloSample-method.Rd
man/getReads-method.Rd
man/getSampleIDs-method.Rd
man/getScaleSamples-method.Rd
man/interpretGamma.Rd
man/numConditions-method.Rd
man/numFeatures-method.Rd
man/numMCInstances-method.Rd
man/plotGamma.Rd
man/selex.Rd
man/synth2.Rd
tests/.DS_Store
tests/testthat.R
tests/testthat/test-aldex.glm.v.ttest.R
tests/testthat/test-aldex.kw.R
tests/testthat/test-aldex.ttest.R
tests/testthat/test-clr-conds.R
tests/testthat/test-scaleSim.R
tests/testthat/test-stats.fast.R
vignettes/.DS_Store
vignettes/ALDEx2_vignette.Rmd
vignettes/ALDEx2_vignette.html
vignettes/aldex.bib
vignettes/main-figure-final-vertical.pdf
vignettes/main-figure-final-vertical.png
vignettes/scaleSim_vignette.Rmd
vignettes/scaleSim_vignette.html
