plotGamma: Create gamma diagram for scale simulation sensitivity result

In ggloor/ALDEx_bioc: Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

Create gamma diagram for scale simulation sensitivity result

Description

Create gamma diagram for scale simulation sensitivity result

Usage

plotGamma(
  sen_results,
  test = "t",
  thresh = 0.05,
  taxa_to_label = 10,
  glmVar = NULL,
  blackWhite = FALSE,
  cex = 1
)

Arguments

sen_results	A list return by aldex.senAnalysis()
test	A character string. What test was used to calculate the results
thresh	A numeric between 0 and 1. What threshold should be used for significance?
taxa_to_label	A positive integer. How many taxa should be labeled in the plot?
glmVar	If 'test = "glm"', what variable do you want plotted?
blackWhite	boolean. If TRUE, returns the plot in black and white.
cex	Default == 1. Controls the size of the axis and text labels in the plots.

Value

A plot object

ggloor/ALDEx_bioc documentation built on Oct. 31, 2023, 1:13 a.m.