Files in ggloor/ALDEx_bioc
Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

.DS_Store
.Rbuildignore
.gitignore
ALDEx2.Rproj
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R R/AllGenerics.R R/aldex-scaleSim.R R/aldex.r R/clr_corr.R R/clr_effect.r R/clr_function.r R/clr_glm-tpq.R R/clr_glm.r R/clr_ttest.r R/expectedDistance.aldex.r R/glm_effect.r R/iqlr_features.r R/makeScaleMatrix.r R/plot.aldex.glm.r R/plot.aldex.r R/plotFeature.aldex.r R/progress.R R/rdirichlet.r R/stats.fast.R README.Rmd README.md
data/.DS_Store
data/selex.txt.gz
data/synth2.txt.gz
inst/CITATION
man/.DS_Store
man/ALDEx2m-package.Rd man/aldex.Rd man/aldex.clr-class.Rd man/aldex.clr.function.Rd man/aldex.corr.Rd man/aldex.effect.Rd man/aldex.expectedDistance.Rd man/aldex.glm.Rd man/aldex.glm.effect.Rd man/aldex.glm.plot.Rd man/aldex.kw.Rd man/aldex.makeScaleMatrix.Rd man/aldex.plot.Rd man/aldex.plotFeature.Rd man/aldex.senAnalysis.Rd man/aldex.set.mode.Rd man/aldex.ttest.Rd man/getConditions-method.Rd man/getDenom-method.Rd man/getDirichletInstances-method.Rd man/getDirichletReplicate-method.Rd man/getDirichletSample-method.Rd man/getFeatureNames-method.Rd man/getFeatures-method.Rd man/getMonteCarloInstances-method.Rd man/getMonteCarloReplicate-method.Rd man/getMonteCarloSample-method.Rd man/getReads-method.Rd man/getSampleIDs-method.Rd man/getScaleSamples-method.Rd man/interpretGamma.Rd man/numConditions-method.Rd man/numFeatures-method.Rd man/numMCInstances-method.Rd man/plotGamma.Rd man/selex.Rd man/synth2.Rd
tests/.DS_Store
tests/testthat.R tests/testthat/test-aldex.glm.v.ttest.R tests/testthat/test-aldex.kw.R tests/testthat/test-aldex.ttest.R tests/testthat/test-clr-conds.R tests/testthat/test-scaleSim.R tests/testthat/test-stats.fast.R
vignettes/.DS_Store
vignettes/ALDEx2_vignette.Rmd
vignettes/ALDEx2_vignette.html
vignettes/aldex.bib
vignettes/main-figure-final-vertical.pdf
vignettes/main-figure-final-vertical.png
vignettes/scaleSim_vignette.Rmd
vignettes/scaleSim_vignette.html
ggloor/ALDEx_bioc documentation built on Oct. 31, 2023, 1:13 a.m.