cmpIdMapping: cmpIdMapping

In girke-lab/drugTargetInteractions: Drug-Target Interactions

cmpIdMapping

Description

Function to generate compound ID mappings UniChem.

This function requires the ID mapping files "src1src2.txt.gz", "src1src22.txt.gz", and "src1src7.txt.gz" to exist in a directory called "downloads" before being run. These can be generated with the downloadUniChem function.

It will do some processing on these files and output an RDS file at outfile. This file can then be used in other functions, such as drugTargetAnnot.

Usage

cmpIdMapping(outfile=file.path(config$resultsPath,"cmp_ids.rds"), rerun=TRUE,config=genConfig()) 

Arguments

outfile	Path to output file.
rerun	If true, runs processing, otherwise does nothing.
config	General configuration. See genConfig.

Value

Generates an RDS file at outfile.

Author(s)

Thomas Girke

See Also

downloadUniChem

Examples

	 
	 cmpIdMapping("cmp_ids.rds",rerun=FALSE)

girke-lab/drugTargetInteractions documentation built on Oct. 10, 2022, 10:35 p.m.