processDrugage: processDrugage

In girke-lab/drugTargetInteractions: Drug-Target Interactions

processDrugage

Description

Download Drug Age data from genomics.senescence.info/drugs. Process the data and write it out as a TSV spreadsheet.

Usage

processDrugage(drugagefile=file.path(config$resultsPath,"drugage_id_mapping.xls"), redownloaddrugage=TRUE,config=genConfig()) 

Arguments

drugagefile	The name of the output file.
redownloaddrugage	If true, download the data file. Otherwise assume the file is already downloaded.
config	General configuration. See genConfig.

Value

Output is written to drugagefile.

Author(s)

Thomas Girke

Examples

	tryCatch({
		config = genConfig(chemblDbPath= 
									system.file("extdata", "chembl_sample.db", package="drugTargetInteractions"))
		processDrugage("druage_id_mapping.xls",TRUE,config)
	},
	error=function(e){
			message("Failed to run processDrugage(), please try again later")
		}
	)

girke-lab/drugTargetInteractions documentation built on Oct. 10, 2022, 10:35 p.m.