drugTargetAnnotTable: drugTargetAnnotTable

In girke-lab/drugTargetInteractions: Drug-Target Interactions

drugTargetAnnotTable

Description

Generates a drug target annotation TSV file. This file includes target information from ChEMBL, drugbank, pubchem, and chembi.

This function requires the ID mapping files "src1src2.txt.gz", "src1src22.txt.gz", and "src1src7.txt.gz" to exist in a directory called "downloads" before being run. These can be generated with the downloadUniChem function.

Usage

drugTargetAnnotTable(outfile, rerun=TRUE,config=genConfig()) 

Arguments

outfile	The name of the output file to write the results to.
rerun	If true, download and generate output file. Otherwise do nothing.
config	General configuration. See genConfig.

Value

Writes output file to outfile.

Author(s)

Thomas Girke

See Also

downloadUniChem

Examples

	config = genConfig(chemblDbPath= 
					system.file("extdata", "chembl_sample.db", package="drugTargetInteractions"))
	drugTargetAnnotTable(outfile="drugTargetAnnot.xls", config=config)

girke-lab/drugTargetInteractions documentation built on Oct. 10, 2022, 10:35 p.m.