drugTargetAnnot: drugTargetAnnot

In girke-lab/drugTargetInteractions: Drug-Target Interactions

drugTargetAnnot

Description

Function to query known drug-target annotations.

Usage

drugTargetAnnot(queryBy=list(molType=NULL, idType=NULL, ids=NULL), cmpid_file=file.path(config$resultsPath,"cmp_ids.rds"), config=genConfig())

Arguments

queryBy	A list defining the query, as described in queryBy.
cmpid_file	Path to a compound ID mapping file, generated by cmpIdMapping.
config	General configuration. See genConfig.

Value

Returns the query results as a data frame.

Author(s)

Thomas Girke

See Also

queryBy cmpIdMapping

Examples

	
	# Tthese are just sample files included in the package. 
	# You should use your own data files.
	config = genConfig(chemblDbPath= 
									system.file("extdata", "chembl_sample.db", package="drugTargetInteractions"),
							  resultsPath = 
									system.file("extdata", "results", package="drugTargetInteractions"))

	queryBy <- list(molType="cmp", idType="chembl_id", ids=c("CHEMBL1233058", "CHEMBL1200916", "CHEMBL437765"))
	qresult <- drugTargetAnnot(queryBy, config=config)

girke-lab/drugTargetInteractions documentation built on Oct. 10, 2022, 10:35 p.m.