predict-VaeModel-Vplots-method: predict

In gongx030/seatac: ATAC-seq V-plot analysis

predict

Description

Predict counts

Usage

## S4 method for signature 'VaeModel,Vplots'
predict(
  model,
  x,
  batch_size = 256L,
  vplots = FALSE,
  nucleosome = TRUE,
  fragment_size_threshold = 150L,
  ...
)

Arguments

model	a trained VaeModel object
x	a Vplots object
batch_size	Batch size (default: 256L)
vplots	Whether or not return predicted Vplots as assays(x)$predicted_counts
nucleosome	Whether or not return predicted nucleosome as rowData(x)$predicted_nucleosome
fragment_size_threshold	Fragment size threshold for nucleosome reads (default: 150L)
...	Additional arguments

Value

a Vplots object

Author(s)

Wuming Gong ([e-mail])

gongx030/seatac documentation built on April 15, 2023, 5:53 a.m.