read_fragment_size_profile-GRanges-character-BSgenome-method: Read fragment size profile

In gongx030/seatac: ATAC-seq V-plot analysis

Read fragment size profile

Description

Read fragment size profile from BAM files

Usage

## S4 method for signature 'GRanges,character,BSgenome'
read_fragment_size_profile(
  x,
  filename,
  genome,
  fragment_size_range = c(0, 320L),
  fragment_size_interval = 10L
)

Arguments

x	a GRange object that define a set of genomic regions.
filename	BAM file name
genome	a BSgenome object
fragment_size_range	The range of the PE reads fragment sizes that are used for constructing Vplot (default: c(0L, 320L))
fragment_size_interval	Fragment size interval (default: 10L)

Author(s)

Wuming Gong ([e-mail])

gongx030/seatac documentation built on April 15, 2023, 5:53 a.m.