results_nucleosome: results_nucleosome

In gongx030/seatac: ATAC-seq V-plot analysis

results_nucleosome

Description

Testing the difference of nucleosomes between two samples

Usage

results_nucleosome(
  model,
  x,
  contrast,
  fragment_size_threshold = 150L,
  batch_size = 16L
)

Arguments

model	a trained VaeModel object
x	a Vplots object
contrast	this argument species a character vector with exactly three elements: the name of a factor in the design formula, the name of the numerator level for the fold change, and the name of the denominator level for the fold change (simplest case)
fragment_size_threshold	Fragment size threshold for nucleosome reads
batch_size	batch size (default: 16L)

Value

a GRanges object

gongx030/seatac documentation built on April 15, 2023, 5:53 a.m.