API for gongx030/seatac
ATAC-seq V-plot analysis

Global functions
.build_VaeModel	Source code
.predict_counts	Source code
.prepare_vplots	Source code
Model-class	Man page
VaeModel	Man page Source code
VaeModel-class	Man page
Vplots-class	Man page
VplotsList	Source code
VplotsList-class	Man page
WarmUpAndCosineDecay	Man page Source code
[,Vplots,ANY,ANY,ANY-method	Man page
[<-,Vplots,ANY,ANY,Vplots-method	Man page
add_genomic_features	Man page
add_genomic_features,Vplots,GRanges-method	Man page
add_genomic_features,Vplots,GRangesList-method	Man page
beta_schedule	Man page Source code
block_center	Man page Source code
cbind,Vplots-method	Man page
count_reads	Man page
count_reads,GRanges,character,BSgenome-method	Man page
count_reads,GRangesList,character,BSgenome-method	Man page
count_reads_core	Man page Source code
cut_data	Man page Source code
dim,Vplots-method	Man page
downsample_vplot	Man page Source code
fit	Man page
fit,VaeModel,Vplots-method	Man page
fit,VaeModel,VplotsList-method	Man page
fit,VaeModel,list-method	Man page
fit,VaeModel,tf_dataset-method	Man page
get_fragment_size_per_batch	Man page Source code
get_nucleosome_diff	Man page Source code
get_nucleosome_score	Man page Source code
kernel_smoothing_1d	Man page Source code
load_model	Man page
load_model,VaeModel-method	Man page
ncol,Vplots-method	Man page
predict	Man page
predict,VaeModel,Vplots-method	Man page
predict,VaeModel,VplotsList-method	Man page
predict_fragment_size	Man page
predict_fragment_size,VaeModel,Vplots-method	Man page
predict_vplots	Man page
prepare_data	Man page
prepare_data,VaeModel,Vplots-method	Man page
prepare_data,VaeModel,VplotsList-method	Man page
read_aggregated_vplot	Man page
read_aggregated_vplot,GRangesList,character,BSgenome-method	Man page
read_bam	Man page
read_bam,character,GRanges,BSgenome-method	Man page
read_bam,character,missing,BSgenome-method	Man page
read_fragment_size_profile	Man page
read_fragment_size_profile,GRanges,character,BSgenome-method	Man page
read_fragment_size_profile,missing,character,BSgenome-method	Man page
read_vplot	Man page
read_vplot,GRanges,character,BSgenome-method	Man page
read_vplot,GRangesList,character,BSgenome-method	Man page
read_vplot_core	Man page Source code
resize,Vplots-method	Man page
results	Man page
results,VaeModel,Vplots-method	Man page
results_nucleosome	Man page Source code
results_phase	Man page Source code
results_vplots	Man page Source code
scale01	Man page
scale01,dgCMatrix-method	Man page
scale01,matrix-method	Man page
scale01,numeric-method	Man page
scale01,tensorflow.tensor-method	Man page
scale_vplot	Man page Source code
seatac	Man page
show,Vplots-method	Man page
show,VplotsList-method	Man page
slidingWindows,Vplots-method	Man page
split_dataset	Man page Source code
standarize_1d	Man page Source code
until_out_of_range2	Man page Source code
validate	Man page
validate,VaeModel,Vplots-method	Man page
validate,VaeModel,VplotsList-method	Man page
validate_bam	Man page Source code
vplot	Man page
vplot,Vplots-method	Man page
vplot_core	Man page Source code