results_phase: results_phase

In gongx030/seatac: ATAC-seq V-plot analysis

results_phase

Description

Test the difference of the phase between two Vplots

Usage

results_phase(
  model,
  x,
  contrast,
  width = 100L,
  repeats = 100L,
  batch_size = 16L
)

Arguments

model	a trained VaeModel object
x	a Vplots object
contrast	this argument species a character vector with exactly three elements: the name of a factor in the design formula, the name of the numerator level for the fold change, and the name of the denominator level for the fold change (simplest case)
width	Width of the centeral regions to be considered (default: 100L)
repeats	Number of repeated sampling (default: 100L)
batch_size	Batch size (default: 16L)

Value

a GRanges object

Author(s)

Wuming Gong ([e-mail])

gongx030/seatac documentation built on April 15, 2023, 5:53 a.m.