Files in gonzolgarcia/svcnvplus
Integrative analyses of CNV segmentation and SV variant calls

.DS_Store
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/.Rapp.history
R/break.annot.r R/breakpoint.density.r R/chr.arm.cnv.r R/circular.plot.r R/clean.cnv.artifact.r R/cnv.freq.plot.r R/freq.p.test.r R/gene.cnv.r R/gene.track.view.r R/get.genesgr.r R/hot.spot.samples.R R/internal_functions.r R/pct.genome.changed.r R/segment.means.r R/shattered.map.plot.r R/shattered.regions.cnv.r R/shattered.regions.r R/sv.model.view.r R/svpluscnv.data.r R/validate.input.data.r README.Rmd README.md
data/.DS_Store
data/hg19.rda
data/hg38.rda
data/svpluscnv.data.rda
figure/.DS_Store
figure/plot1-1.png
figure/plot1.2-1.png
figure/plot2-1.png
figure/plot3-1.png
figure/plot4.1-1.png
figure/plot4.2-1.png
figure/plot5-1.png
figure/plot6-1.png
figure/plot7-1.png
figure/plot9-1.png
man/.DS_Store
man/IQM.Rd man/IQSD.Rd man/amp.del.Rd man/ave.segmean.Rd man/break.annot-class.Rd man/break.density.Rd man/breaks-class.Rd man/chr.arm.cnv.Rd man/chr.sort.Rd man/chromo.regs-class.Rd man/chromosome.limit.coords.Rd man/circ.chromo.plot.Rd man/circ.wg.plot.Rd man/clean.cnv.artifact.Rd man/cnv.break.annot.Rd man/cnv.breaks.Rd man/cnv.freq.Rd man/cnvfreq-class.Rd man/createRandomString.Rd man/d3gb.chr.lim.Rd man/dngr.Rd man/freq.p.test.Rd man/gene.cnv.Rd man/gene.track.view.Rd man/geneBreakOverlap.Rd man/genecnv-class.Rd man/get.genesgr.Rd man/hot.spot.samples.Rd man/map2color.Rd man/match.breaks.Rd man/med.segmean.Rd man/merge2lists.Rd man/null.freq-class.Rd man/pct.genome.changed.Rd man/refSeqDat-class.Rd man/refseq_hg19.Rd man/segdat_lung_ccle.Rd man/segment.gap.Rd man/shattered.eval.Rd man/shattered.map.plot.Rd man/shattered.regions.Rd man/shattered.regions.cnv.Rd man/sv.model.view.Rd man/svc.break.annot.Rd man/svc.breaks.Rd man/svcnvio-class.Rd man/upgr.Rd man/validate.cnv.Rd man/validate.svc.Rd
vignettes/.DS_Store
vignettes/svpluscnv_howto.Rmd
gonzolgarcia/svcnvplus documentation built on March 4, 2020, 6:02 p.m.