genecnv-class: Class to store breakpoint annotations

In gonzolgarcia/svcnvplus: Integrative analyses of CNV segmentation and SV variant calls

Description

Class to store breakpoint annotations

Arguments

cnvmat	(data.frame): matrix containing average CNV per gene (rows) for each sample (columns)
genesgr	(S4): a GenomicRanges object with genomic feature annotations such as gene coordinates
cnv	(S4) an object of class svcnvio containing data type 'cnv' validated by validate.cnv
param	(list):

Value

an instance of the class 'genecnv' containing gene level copy number info

gonzolgarcia/svcnvplus documentation built on March 4, 2020, 6:02 p.m.