shattered.eval: Evaluate shattered regions based on interleaved breaks and...
In gonzolgarcia/svcnvplus: Integrative analyses of CNV segmentation and SV variant calls

Evaluate shattered regions based on interleaved breaks and breakpoint dispersion parameters

shattered.eval(
  chromo.regs.obj,
  interleaved.cut = 0.5,
  dist.iqm.cut = 1e+05,
  verbose = TRUE
)

`chromo.regs.obj`	(chromo.regs) An object of class chromo.regs
`interleaved.cut`	(numeric) the percentage of non interleaved structural variant calls
`dist.iqm.cut`	(numeric) interquantile average of the distance between breakpoints within a shattered region
`verbose`	(logical)

an instance of the class 'chromo.regs' containing breakpoint mapping onto genes

gonzolgarcia/svcnvplus documentation built on March 4, 2020, 6:02 p.m.

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