med.segmean: Obtain the median segment mean from a segmentaton file; The...
In gonzolgarcia/svcnvplus: Integrative analyses of CNV segmentation and SV variant calls
Description
Usage
Arguments
Value
Examples
View source: R/cnv.freq.plot.r
View source: R/segment.means.r
Description
Obtain the median segment mean from a segmentaton file; The median refers to the logR that occupies a center of all segments ordered by their log ratio
Obtain the median segment mean from a segmentaton file; The median refers to the logR that occupies a center of all segments ordered by their log ratio
Usage
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med.segmean(cnv)
med.segmean(cnv)
Arguments
cnv
(S4) an object of class svcnvio containing data type 'cnv' validated by validate.cnv
Value
(numeric) a vector containing the median logR value of a segmented data.frame
(numeric) a vector containing the median logR value of a segmented data.frame
Examples
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## validate input data.frames
cnv <- validate.cnv(segdat_lung_ccle)
med.segmean(cnv)
## validate input data.frames
cnv <- validate.cnv(segdat_lung_ccle)
med.segmean(cnv)
gonzolgarcia/svcnvplus documentation built on March 4, 2020, 6:02 p.m.
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Description Usage Arguments Value Examples
View source: R/cnv.freq.plot.r View source: R/segment.means.r
Description
Obtain the median segment mean from a segmentaton file; The median refers to the logR that occupies a center of all segments ordered by their log ratio
Obtain the median segment mean from a segmentaton file; The median refers to the logR that occupies a center of all segments ordered by their log ratio
Usage
1 2 3 | med.segmean(cnv)
med.segmean(cnv)
|
Arguments
cnv |
(S4) an object of class svcnvio containing data type 'cnv' validated by validate.cnv |
Value
(numeric) a vector containing the median logR value of a segmented data.frame
(numeric) a vector containing the median logR value of a segmented data.frame
Examples
1 2 3 4 5 6 7 8 9 | ## validate input data.frames
cnv <- validate.cnv(segdat_lung_ccle)
med.segmean(cnv)
## validate input data.frames
cnv <- validate.cnv(segdat_lung_ccle)
med.segmean(cnv)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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