breaks-class: Class to store breakpoint annotations in association with...

In gonzolgarcia/svcnvplus: Integrative analyses of CNV segmentation and SV variant calls

Description

Class to store breakpoint annotations in association with genomic features (e.g. gene loci)

Arguments

breaks	(data.table): the breakpoint info containing data.table, this will be occupied by the CNV segmentation data in the case of cnv.break.annot or SV for sv.break.annot. Unique random string rownames are added to the returned breaks data.frame.
burden	(numeric): a vector containing the total number of breakpoints in each sample
param	(list): a list of parametres provided

Value

an instance of the class 'breaks' containing breakpoint and breakpoint burden information

gonzolgarcia/svcnvplus documentation built on March 4, 2020, 6:02 p.m.