chr.arm.cnv: Obtain a matrix with the weighted average CN per chromosome...

In gonzolgarcia/svcnvplus: Integrative analyses of CNV segmentation and SV variant calls

Description

Obtain a matrix with the weighted average CN per chromosome arm

Usage

chr.arm.cnv(cnv, genome.v = "hg19", verbose = TRUE)

Arguments

cnv	(S4) an object of class svcnvio containing data type 'cnv' validated by validate.cnv
genome.v	('hg19' or 'hg38') reference genome version to draw chromosome limits and centromeres
verbose	(logical)

Value

a matrix of chromosome arms (rows) versus samples (cols) with average segment logRs per cell

Examples

cnv <- validate.cnv(segdat_lung_ccle)
chr.arm.cnv(cnv, genome.v="hg19")

gonzolgarcia/svcnvplus documentation built on March 4, 2020, 6:02 p.m.