Files in gosianow/DRIMSeq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/DRIMSeq.R
R/class_MatrixList.R
R/class_dmDSdata.R
R/class_dmDSfit.R
R/class_dmDSprecision.R
R/class_dmDStest.R
R/class_dmSQTLdata.R
R/class_dmSQTLfit.R
R/class_dmSQTLprecision.R
R/class_dmSQTLtest.R
R/class_show_utils.R
R/dmDS_CRadjustment.R
R/dmDS_estimateCommonPrecision.R
R/dmDS_estimateTagwisePrecision.R
R/dmDS_filter.R
R/dmDS_fit.R
R/dmDS_profileLik.R
R/dmSQTL_CRadjustment.R
R/dmSQTL_estimateCommonPrecision.R
R/dmSQTL_estimateTagwisePrecision.R
R/dmSQTL_filter.R
R/dmSQTL_fit.R
R/dmSQTL_permutations.R
R/dmSQTL_profileLik.R
R/dm_CRadjustmentManyGroups.R
R/dm_CRadjustmentOneGroup.R
R/dm_CRadjustmentRegression.R
R/dm_LRT.R
R/dm_core_Hessian.R
R/dm_core_colorb.R
R/dm_core_deviance.R
R/dm_core_lik.R
R/dm_core_score.R
R/dm_estimateMeanExpression.R
R/dm_fitManyGroups.R
R/dm_fitOneGroup.R
R/dm_fitRegression.R
R/dm_plotData.R
R/dm_plotPrecision.R
R/dm_plotProportions.R
R/dm_plotPvalues.R
R/dm_profileLikModeration.R
README.md
inst/CITATION
man/MatrixList-class.Rd
man/dmDSdata-class.Rd
man/dmDSdata.Rd
man/dmDSfit-class.Rd
man/dmDSprecision-class.Rd
man/dmDStest-class.Rd
man/dmFilter.Rd
man/dmFit.Rd
man/dmPrecision.Rd
man/dmSQTLdata-class.Rd
man/dmSQTLdata.Rd
man/dmSQTLfit-class.Rd
man/dmSQTLprecision-class.Rd
man/dmSQTLtest-class.Rd
man/dmTest.Rd
man/dm_plotDataDSInfo.Rd
man/dm_plotProportions.Rd
man/plotData.Rd
man/plotPValues.Rd
man/plotPrecision.Rd
man/plotProportions.Rd
tests/testthat.R
tests/testthat/test_MatrixList.R
tests/testthat/test_dm_adjustment.R
tests/testthat/test_gene_filter.R
tests/testthat/test_lik_score.R
tests/testthat/test_total_switch.R
vignettes/DRIMSeq.Rnw
vignettes/References.bib
